Performs a peptide/protein identification with the CompNovo engine.

pot. predecessor tools	$\longrightarrow$ CompNovoCID $\longrightarrow$	pot. successor tools
any signal-/preprocessing tool (in mzML format)	$\longrightarrow$ CompNovoCID $\longrightarrow$	IDFilter or any protein/peptide processing tool

Experimental classes: This TOPP-tool is not well tested and not all features might be properly implemented and tested!

All spectra are assumed to be CID spectra only.

The details are described in the publication:

Andreas Bertsch, Andreas Leinenbach, Anton Pervukhin, Markus Lubeck, Ralf Hartmer, Carsten Baessmann, Yasser A Elnakady, Rolf Müller, Sebastian Böcker, Christian G Huber and Oliver Kohlbacher (2009) "De novo peptide sequencing by tandem MS using complementary CID and electron transfer dissociation" Electrophoresis, 30(21):3736-3747. (PubMed ID: 19862751)

Experimental classes: This implementation may contain bugs!

Note: Currently mzIdentML (mzid) is not directly supported as an input/output format of this tool. Convert mzid files to/from idXML using IDFileConverter if necessary.

The command line parameters of this tool are:

INI file documentation of this tool: