Picks peaks in SRM/MRM chromatograms that belong to the same precursors.

potential predecessor tools	$\longrightarrow$ MRMTransitionGroupPicker $\longrightarrow$	potential successor tools
OpenSwathChromatogramExtractor		OpenSwathFeatureXMLToTSV
MRMMapper

This tools accepts a set of chromatograms and picks peaks in them, correctly grouping related transitions from the same precursor together. It will perform the following steps:

Step 1: find features (peaks) in individual chromatograms

Step 2: merge these features to consensus features that span multiple chromatograms

Step 1 is performed by smoothing the individual chromatogram and applying the PeakPickerHiRes.

Step 2 is performed by finding the largest peak overall and use this to create a feature, propagating this through all chromatograms.

The command line parameters of this tool are:

INI file documentation of this tool: